{
"TBR-LB01-0001_SMART-seq v4": {
"Anatomical Structure (CV)": "CP:SSp-ul:SSp-bfd:SSs",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-LB01-0001",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "C57Bl6",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TBR_LB01_0001.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TBR_LB01_0001.fastq.tar"
]
},
"TBR-LB01-0002_SMART-seq v4": {
"Anatomical Structure (CV)": "MOs5:CP:VAL:MDl",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-LB01-0002",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "C57Bl6",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TBR_LB01_0002.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TBR_LB01_0002.fastq.tar"
]
},
"TBR-LB01-0003_SMART-seq v4": {
"Anatomical Structure (CV)": "MOs:CP:LD:ZI",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-LB01-0003",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "C57Bl6",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TBR_LB01_0003.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TBR_LB01_0003.fastq.tar"
]
},
"TBR-LB01-0004_SMART-seq v4": {
"Anatomical Structure (CV)": null,
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-LB01-0004",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "C57Bl6",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TBR_LB01_0004.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TBR_LB01_0004.fastq.tar"
]
},
"TBR-LB01-0005_SMART-seq v4": {
"Anatomical Structure (CV)": "CP:PVT:SI:MDm",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-LB01-0005",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "C57Bl6",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TBR_LB01_0005.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TBR_LB01_0005.fastq.tar"
]
},
"TBR-LB01-0006_SMART-seq v4": {
"Anatomical Structure (CV)": "MOs:VAL;RT:PO:VTA;ZI",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-LB01-0006",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "C57Bl6",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TBR_LB01_0006.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TBR_LB01_0006.fastq.tar"
]
},
"TBR-LB01-0007_SMART-seq v4": {
"Anatomical Structure (CV)": "fail:RT:CL:SCig-b",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-LB01-0007",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "C57Bl6",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TBR_LB01_0007.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TBR_LB01_0007.fastq.tar"
]
},
"TBR-LB01-0009_SMART-seq v4": {
"Anatomical Structure (CV)": "NPC:PAG:CL:CP",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-LB01-0009",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Male n=5; adult P56;coronal 1mm;0.13 to -0.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TBR_LB01_0009.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TBR_LB01_0009.fastq.tar"
]
},
"TBR-LB01-00010_SMART-seq v4": {
"Anatomical Structure (CV)": null,
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-LB01-00010",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Male n=5; adult P56;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TBR_LB01_0010.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TBR_LB01_0010.fastq.tar"
]
},
"TBR-LB01-00011_SMART-seq v4": {
"Anatomical Structure (CV)": "PF:SCig:fail:CP",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-LB01-00011",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Male n=5; adult P56;coronal 1mm;-2.27 to -3.17 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TBR_LB01_0011.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TBR_LB01_0011.fastq.tar"
]
},
"TBR-LB01-00012_SMART-seq v4": {
"Anatomical Structure (CV)": "OT2;isl:MOs:SM:VTA",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-LB01-00012",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Male n=5; adult P56;coronal 1mm;-3.27 to -4.07 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TBR_LB01_0012.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TBR_LB01_0012.fastq.tar"
]
},
"TCG-L01-0006_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "Aid:MOs:MOp",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0006",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1570",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=3; adult P56;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0006_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0006_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HN2YHBCX2_12_TCG-L01-0006_S4_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HN2YHBCX2_12_TCG-L01-0006_S4_L001.fastq.tar"
]
},
"TCG-L01-0007_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "ACB:RT:PT:LHA",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0007",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "2265",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5; adult P56;coronal 1mm;0.13 to -0.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0007_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0007_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL5VBCX2_12_TCG-L01-0007_S1_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HNNKWBCX2_12_TCG-L01-0007_S2_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL5VBCX2_12_TCG-L01-0007_S1_L001.fastq.tar"
]
},
"TCG-L01-0008_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": null,
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0008",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1033",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5; adult P56;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0008_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0008_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL5VBCX2_12_TCG-L01-0008_S2_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HNNKWBCX2_12_TCG-L01-0008_S3_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL5VBCX2_12_TCG-L01-0008_S2_L001.fastq.tar"
]
},
"TCG-L01-0009_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "MOs:MOp:SSP-m:SSp-m",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0009",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1730",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=5; adult P58;coronal 1mm;0.13 to -0.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0009_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0009_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL5VBCX2_12_TCG-L01-0009_S3_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL5VBCX2_12_TCG-L01-0009_S3_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HNNKWBCX2_12_TCG-L01-0009_S4_L001.fastq.tar"
]
},
"TCG-L01-0010_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": null,
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0010",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "366",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=5; adult P58;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0010_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0010_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HNNKWBCX2_12_TCG-L01-0010_S5_L001.fastq.tar"
]
},
"TCG-L01-0011_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "VPM:LD:RT",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0011",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "2275",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Mixed n=10; adult P56-P58;coronal 1mm;1.03 to 0.23 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0011_possorted_genome_bam.bam.tar"
]
},
"TCG-L01-0014_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": null,
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0014",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "97",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=6; adult P59-57;coronal 1mm;0.13 to -0.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0014_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0014_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HNVCHBCX2_1_TCG-L01-0014_S3_L001.fastq.tar"
]
},
"TCG-L01-0015_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "MRN:MRN:MRN:MRN",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0015",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "371",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=6; adult P59-57;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0015_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0015_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HNVCHBCX2_1_TCG-L01-0015_S4_L001.fastq.tar"
]
},
"TCG-L01-0018_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "MRN:MRN:fail:RN",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0018",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1334",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5; adult P59;coronal 1mm;0.13 to -0.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0018_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0018_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL32BCX2_12_TCG-L01-0018_S1_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL32BCX2_12_TCG-L01-0018_S1_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HNVCHBCX2_1_TCG-L01-0018_S7_L001.fastq.tar"
]
},
"TCG-L01-0019_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "VTA:APN:MRN:RN",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0019",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "139",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5; adult P59;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0019_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0019_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HNVCHBCX2_1_TCG-L01-0019_S8_L001.fastq.tar"
]
},
"TCG-L01-0020_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "PRNc:PRNc:PRNc:PRNc",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0020",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "2408",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=6; adult P59-57;coronal 1mm;1.03 to 0.23 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0020_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0020_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HNVCHBCX2_1_TCG-L01-0020_S9_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL32BCX2_12_TCG-L01-0020_S2_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL32BCX2_12_TCG-L01-0020_S2_L001.fastq.tar"
]
},
"TCG-L01-0021_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "PAG:PAG:MRN:APN",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0021",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "2657",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=6; adult P59,P57;coronal 1mm;1.03 to 0.23 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0021_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0021_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HNVCHBCX2_1_TCG-L01-0021_S10_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL3HBCX2_12_TCG-L01-0021_S1_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL3HBCX2_12_TCG-L01-0021_S1_L001.fastq.tar"
]
},
"TCG-L01-0022_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "fail:PAG:MRN:APN",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0022",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "3402",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=6; adult P59-57;coronal 1mm;0.13 to -0.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0022_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0022_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL32BCX2_12_TCG-L01-0022_S3_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HNVCHBCX2_1_TCG-L01-0022_S11_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL32BCX2_12_TCG-L01-0022_S3_L001.fastq.tar"
]
},
"TCG-L01-0023_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "PRNc:PRNc:TRN:PRNc",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0023",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "2452",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=6; adult P59-57;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0023_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0023_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL3HBCX2_12_TCG-L01-0023_S2_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL3HBCX2_12_TCG-L01-0023_S2_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HNVCHBCX2_1_TCG-L01-0023_S12_L001.fastq.tar"
]
},
"TCG-L01-0024_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": null,
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0024",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1507",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=6; adult P56;coronal 1mm;-2.27 to -3.17 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0024_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0024_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HNVCHBCX2_1_TCG-L01-0024_S13_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL3HBCX2_12_TCG-L01-0024_S3_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HWL3HBCX2_12_TCG-L01-0024_S3_L001.fastq.tar"
]
},
"TCG-L01-0026_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": null,
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0026",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1590",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5; adult P56;coronal 1mm;-2.27 to -3.17 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0026_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0026_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HYJLWBCX2_12_TCG-L01-0026_S1_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HYJLWBCX2_12_TCG-L01-0026_S1_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0026_S1_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0026_S1_L001.fastq.tar"
]
},
"TCG-L01-0027_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": null,
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0027",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "2187",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5; adult P56;coronal 1mm;-3.27 to -4.07 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0027_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0027_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0027_S2_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0027_S2_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3LJBCX2_12_TCG-L01-0027_S1_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3LJBCX2_12_TCG-L01-0027_S1_L002.fastq.tar"
]
},
"TCG-L01-0028_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "PCG:PCG:fail:fail",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0028",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "758",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=5; adult P58;coronal 1mm;-2.27 to -3.17 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0028_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0028_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0028_S3_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0028_S3_L002.fastq.tar"
]
},
"TCG-L01-0029_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": null,
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0029",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "864",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=5; adult P58;coronal 1mm;-3.27 to -4.07 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0029_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0029_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0029_S4_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0029_S4_L002.fastq.tar"
]
},
"TCG-L01-0032_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "PARN:IRN:PPy:fail",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0032",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1998",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5; adult P58-P59;coronal 1mm;-2.27 to -3.17 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0032_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0032_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0032_S5_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HYJLWBCX2_12_TCG-L01-0032_S2_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0032_S5_L002.fastq.tar"
]
},
"TCG-L01-0033_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "PAG:PAG:PAG;DR:PPN",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0033",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1300",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5; adult P58-P59;coronal 1mm;-3.27 to -4.07 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0033_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0033_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0033_S6_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0033_S6_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY5TTBCX2_12_TCG-L01-0033_S1_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY5TTBCX2_12_TCG-L01-0033_S1_L002.fastq.tar"
]
},
"TCG-L01-0034_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "PPN:PB:KF:SUT",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0034",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "2071",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=6; adult P58-P59;coronal 1mm;-2.27 to -3.17 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0034_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0034_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY5TTBCX2_12_TCG-L01-0034_S2_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY5TTBCX2_12_TCG-L01-0034_S2_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0034_S7_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0034_S7_L002.fastq.tar"
]
},
"TCG-L01-0035_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "PAG:PAG:PAG:PPN",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0035",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1169",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=6; adult P58-P59;coronal 1mm;-3.27 to -4.07 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0035_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0035_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HYL72BCX2_12_TCG-L01-0035_S1_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HYL72BCX2_12_TCG-L01-0035_S1_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0035_S8_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3HNBCX2_12_TCG-L01-0035_S8_L002.fastq.tar"
]
},
"TCG-L01-0038_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "PB:PB:KF:SUT",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0038",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "3156",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5; adult P58-P59;coronal 1mm;2.83 to 2.43 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0038_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0038_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3LCBCX2_12_TCG-L01-0038_S1_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY5TTBCX2_12_TCG-L01-0038_S3_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3LCBCX2_12_TCG-L01-0038_S1_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY5TTBCX2_12_TCG-L01-0038_S3_L001.fastq.tar"
]
},
"TCG-L01-0039_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "MRN:APN:MRN:VTA;MRN",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0039",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "2128",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=6; adult P59-P57;coronal 1mm;2.83 to 2.43 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0039_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0039_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY5TTBCX2_12_TCG-L01-0039_S4_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY5TTBCX2_12_TCG-L01-0039_S4_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3LCBCX2_12_TCG-L01-0039_S2_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3LCBCX2_12_TCG-L01-0039_S2_L001.fastq.tar"
]
},
"TCG-L01-0040_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "MOp;MOs",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0040",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "2082",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5; adult P56-P58;coronal 1mm;2.83 to 2.43 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0040_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0040_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3LCBCX2_12_TCG-L01-0040_S3_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3LCBCX2_12_TCG-L01-0040_S3_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HYL72BCX2_12_TCG-L01-0040_S2_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HYL72BCX2_12_TCG-L01-0040_S2_L001.fastq.tar"
]
},
"TCG-L01-0041_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "MOp;MOs",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0041",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1977",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=5; adult P58;coronal 1mm;2.83 to 2.43 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0041_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0041_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HYL72BCX2_12_TCG-L01-0041_S3_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3LCBCX2_12_TCG-L01-0041_S4_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3LCBCX2_12_TCG-L01-0041_S4_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HYL72BCX2_12_TCG-L01-0041_S3_L002.fastq.tar"
]
},
"TCG-L01-0042_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "Piriform",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0042",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "518",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5; adult P58;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0042_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0042_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3LCBCX2_12_TCG-L01-0042_S5_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3LCBCX2_12_TCG-L01-0042_S5_L001.fastq.tar"
]
},
"TCG-L01-0043_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "Piriform",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-L01-0043",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "432",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=5; adult P56;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TCG-L01-0043_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TCG-L01-0043_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3LCBCX2_12_TCG-L01-0043_S6_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/HY3LCBCX2_12_TCG-L01-0043_S6_L002.fastq.tar"
]
},
"TBR-L01-0001_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "MOp;MOs",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-L01-0001",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "3472",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Female n=5; adult P55;coronal 1mm;2.83 to 2.43 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TBR-L01-0001-possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0001_S1_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0001_S1_L002.fastq.tar"
]
},
"TBR-L01-0002_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "MOp;MOs",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-L01-0002",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "6966",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Female n=5; adult P55;coronal 1mm;1.03 to 0.23 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TBR-L01-0002-possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0002_S2_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0002_S2_L001.fastq.tar"
]
},
"TBR-L01-0003_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "SSp;SSs;VISC;GU;AIp",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-L01-0003",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "2123",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Female n=5; adult P55;coronal 1mm;0.13 to -0.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TBR-L01-0003-possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0003_S3_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0003_S3_L001.fastq.tar"
]
},
"TBR-L01-0004_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "SSp;SSs;VISC;AIp",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-L01-0004",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "3096",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Female n=5; adult P55;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TBR-L01-0004-possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0004_S4_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0004_S4_L001.fastq.tar"
]
},
"TBR-L01-0005_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "AUDd;AUDp;AUDv;TEa",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-L01-0005",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "2882",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Female n=5; adult P55;coronal 1mm;-2.27 to -3.17 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TBR-L01-0005-possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0005_S5_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0005_S5_L001.fastq.tar"
]
},
"TBR-L01-0006_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "VISpm;VISp;VISl;VISli",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-L01-0006",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "2951",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Female n=5; adult P55;coronal 1mm;-3.27 to -4.07 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TBR-L01-0006-possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0006_S6_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0006_S6_L002.fastq.tar"
]
},
"TBR-L01-0007_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "PIR",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-L01-0007",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "394",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Female n=5; adult P55;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": []
},
"TBR-L01-0008_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "MOp;MOs",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-L01-0008",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "3811",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Male n=5; adult P56;coronal 1mm;2.83 to 2.43 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TBR-L01-0008-possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0008_S1_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0008_S1_L001.fastq.tar"
]
},
"TBR-L01-0010_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "SSp;SSs;VISC;GU;AIp",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-L01-0010",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "3982",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Male n=5; adult P56;coronal 1mm;0.13 to -0.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TBR-L01-0010-possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0010_S1_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0010_S1_L001.fastq.tar"
]
},
"TBR-L01-0011_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "SSp;SSs;VISC;AIp",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-L01-0011",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "3787",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Male n=5; adult P56;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TBR-L01-0011-possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0011_S1_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0011_S1_L002.fastq.tar"
]
},
"TBR-L01-0012_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "AUDd;AUDp;AUDv;TEa",
"Metadata Submission": "2019Q4",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-L01-0012",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "3776",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Male n=5; adult P56;coronal 1mm;-2.27 to -3.17 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TBR-L01-0012-possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0012_S2_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0012_S2_L002.fastq.tar"
]
},
"TBR-L01-0013_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "VISpm;VISp;VISl;VISli",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "TBR-L01-0013",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tbr2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "4002",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tbr2-lineage projection neurons;FACS-GFP;Tamoxifen E16.5;Male n=5; adult P56;coronal 1mm;-3.27 to -4.07 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TBR-L01-0013_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/TBR-L01-0013-possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/TBR-L01-0013_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0013_S7_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0013_S7_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0013_S3_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0013_S1_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0013_S3_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/TBR-L01-0013_S1_L001.fastq.tar"
]
},
"CUX-L01-0001_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "MOp;MOs",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "CUX-L01-0001",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Cux2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "2641",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Cux2-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5;adult P56;coronal 1mm;2.83 to 2.43 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/CUX-L01-0001_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/CUX-L01-0001_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0001_S4_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0001_S2_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0001_S2_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0001_S4_L001.fastq.tar"
]
},
"CUX-L01-0002_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "MOp;MOs",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "CUX-L01-0002",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Cux2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "4600",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Cux2-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5;adult P56;coronal 1mm;1.03 to 0.23 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/CUX-L01-0002_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/CUX-L01-0002_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0002_S2_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0002_S5_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0002_S2_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0002_S5_L001.fastq.tar"
]
},
"CUX-L01-0003_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "SSp;SSs;VISC;GU;AIp",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "CUX-L01-0003",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Cux2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "3323",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Cux2-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5;adult P56;coronal 1mm;0.13 to -0.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/CUX-L01-0003_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/CUX-L01-0003_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0003_S3_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0003_S1_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0003_S3_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0003_S1_L002.fastq.tar"
]
},
"CUX-L01-0004_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "SSp;SSs;VISC;AIp",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "CUX-L01-0004",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Cux2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "3829",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Cux2-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5;adult P56;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/CUX-L01-0004_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/CUX-L01-0004_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0004_S1_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0004_S6_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0004_S6_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0004_S1_L001.fastq.tar"
]
},
"CUX-L01-0005_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "AUDd;AUDp;AUDv;TEa",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "CUX-L01-0005",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Cux2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1429",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Cux2-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5;adult P56;coronal 1mm;-2.27 to -3.17 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/CUX-L01-0005_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/CUX-L01-0005_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0005_S2_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0005_S1_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0005_S1_L001.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0005_S2_L001.fastq.tar"
]
},
"CUX-L01-0006_10x Chromium 3' v2 sequencing": {
"Anatomical Structure (CV)": "VISpm;VISp;VISl;VISli",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "CUX-L01-0006",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Cux2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "10x Chromium 3' v2 sequencing",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "3193",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_sn_10xv2",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Cux2-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5;adult P56;coronal 1mm;-3.27 to -4.07 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/align/CUX-L01-0006_possorted_genome_bam.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/processed/counts/CUX-L01-0006_metrics_summary.csv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0006_S1_L002.fastq.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v2/mouse/raw/CUX-L01-0006_S1_L001.fastq.tar"
]
},
"TCG-LB01-0001_SMART-seq v4": {
"Anatomical Structure (CV)": "MOp;MOs",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-LB01-0001",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=5; adult P56;coronal 1mm;2.83 to 2.43 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TCG-LB01-0001.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/counts/TCG-LB01-0001.counts.tsv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TCG-LB01-0001.fastq.tar"
]
},
"TCG-LB01-0002_SMART-seq v4": {
"Anatomical Structure (CV)": "MOp;MOs",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-LB01-0002",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=4; adult P56;coronal 1mm;2.83 to 2.43 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TCG-LB01-0002.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/counts/TCG-LB01-0002.counts.tsv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TCG-LB01-0002.fastq.tar"
]
},
"TCG-LB01-0003_SMART-seq v4": {
"Anatomical Structure (CV)": "SSp;SSs;VISC;AIp",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-LB01-0003",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=5; adult P56;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TCG-LB01-0003.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/counts/TCG-LB01-0003.counts.tsv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TCG-LB01-0003.fastq.tar"
]
},
"TCG-LB01-0004_SMART-seq v4": {
"Anatomical Structure (CV)": "MOp;Mos",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-LB01-0004",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5; adult P56;coronal 1mm;1.03 to 0.23 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TCG-LB01-0004.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/counts/TCG-LB01-0004.counts.tsv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TCG-LB01-0004.fastq.tar"
]
},
"TCG-LB01-0005_SMART-seq v4": {
"Anatomical Structure (CV)": "SSp;SSs;VISC;GU;AIp",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-LB01-0005",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=4; adult P56;coronal 1mm;0.13 to -0.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TCG-LB01-0005.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/counts/TCG-LB01-0005.counts.tsv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TCG-LB01-0005.fastq.tar"
]
},
"TCG-LB01-0006_SMART-seq v4": {
"Anatomical Structure (CV)": "SSp;SSs;VISC;GU;AIp",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "TCG-LB01-0006",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Tcerg1l-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Tcerg1l-lineage projection neurons;FACS-GFP;Tamoxifen P7;Female n=5; adult P56;coronal 1mm;0.13 to -0.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/TCG-LB01-0006.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/counts/TCG-LB01-0006.counts.tsv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/TCG-LB01-0006.fastq.tar"
]
},
"CUX-LB01-0001_SMART-seq v4": {
"Anatomical Structure (CV)": "SSp;SSs;VISC;GU;AIp",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "CUX-LB01-0001",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Cux2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Cux2-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5;adult P56;coronal 1mm;0.13 to -0.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/CUX-LB01-0001.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/counts/CUX-LB01-0001.counts.tsv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/CUX-LB01-0001.fastq.tar"
]
},
"CUX-LB01-0002_SMART-seq v4": {
"Anatomical Structure (CV)": "SSp;SSs;VISC;AIp",
"Metadata Submission": "2020Q1",
"Wrangler Notes": null,
"null": null,
"sample_id": "CUX-LB01-0002",
"organism": "mouse",
"taxon_id": "NCBI:txid10090",
"donor_id": "None",
"genotype": "Cux2-CreERT2;Sun1-sfGFP",
"modality": "transcriptomics",
"technique": "SMART-seq v4",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": "1",
"organization": "Harvard University",
"investigator": "Paola Arlotta",
"grant_number": "1U19MH114821-01",
"project": "huang_pn_bulk_SSv4",
"data_archive": "NeMO",
"r24_directory": "None",
"comments": "Cux2-lineage projection neurons;FACS-GFP;Tamoxifen P7;Male n=5;adult P56;coronal 1mm;-0.57 to -1.47 mm ant. ac",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/align/CUX-LB01-0002.namesorted.bam.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/processed/counts/CUX-LB01-0002.counts.tsv.tar",
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/bulk/SSv4/mouse/raw/CUX-LB01-0002.fastq.tar"
]
},
"TLE-L01-0002_10x Chromium 3' v3 sequencing": {
"metadata_submission": "NA",
"data_collection": "",
"sample_id": "TLE-L01-0002",
"organism": "Mouse",
"taxon_id": "NA",
"donor_id": "",
"genotype": "NA",
"modality": "Transcriptome",
"technique": "10x Chromium 3' v3 sequencing",
"anatomical_region": "NA",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": 0,
"organization": "NA",
"investigator": "NA",
"grant_number": "NA",
"data_archive": "NeMO",
"r24_directory": "NA",
"project": "NA",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v3/mouse/raw/TLE-L01-0002_S2_L001-001_round1.fastq.tar"
]
},
"TLE-L01-0004_10x Chromium 3' v3 sequencing": {
"metadata_submission": "NA",
"data_collection": "",
"sample_id": "TLE-L01-0004",
"organism": "Mouse",
"taxon_id": "NA",
"donor_id": "",
"genotype": "NA",
"modality": "Transcriptome",
"technique": "10x Chromium 3' v3 sequencing",
"anatomical_region": "NA",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": 0,
"organization": "NA",
"investigator": "NA",
"grant_number": "NA",
"data_archive": "NeMO",
"r24_directory": "NA",
"project": "NA",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v3/mouse/raw/TLE-L01-0004_S4_L001-001_round2.fastq.tar"
]
},
"TLE-L01-0001_10x Chromium 3' v3 sequencing": {
"metadata_submission": "NA",
"data_collection": "",
"sample_id": "TLE-L01-0001",
"organism": "Mouse",
"taxon_id": "NA",
"donor_id": "",
"genotype": "NA",
"modality": "Transcriptome",
"technique": "10x Chromium 3' v3 sequencing",
"anatomical_region": "NA",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": 0,
"organization": "NA",
"investigator": "NA",
"grant_number": "NA",
"data_archive": "NeMO",
"r24_directory": "NA",
"project": "NA",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v3/mouse/raw/TLE-L01-0001_S1_L001-001_round1.fastq.tar"
]
},
"TLE-L01-0006_10x Chromium 3' v3 sequencing": {
"metadata_submission": "NA",
"data_collection": "",
"sample_id": "TLE-L01-0006",
"organism": "Mouse",
"taxon_id": "NA",
"donor_id": "",
"genotype": "NA",
"modality": "Transcriptome",
"technique": "10x Chromium 3' v3 sequencing",
"anatomical_region": "NA",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": 0,
"organization": "NA",
"investigator": "NA",
"grant_number": "NA",
"data_archive": "NeMO",
"r24_directory": "NA",
"project": "NA",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v3/mouse/raw/TLE-L01-0006_S6_L002-001_round2.fastq.tar"
]
},
"TLE-L01-0005_10x Chromium 3' v3 sequencing": {
"metadata_submission": "NA",
"data_collection": "",
"sample_id": "TLE-L01-0005",
"organism": "Mouse",
"taxon_id": "NA",
"donor_id": "",
"genotype": "NA",
"modality": "Transcriptome",
"technique": "10x Chromium 3' v3 sequencing",
"anatomical_region": "NA",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": 0,
"organization": "NA",
"investigator": "NA",
"grant_number": "NA",
"data_archive": "NeMO",
"r24_directory": "NA",
"project": "NA",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v3/mouse/raw/TLE-L01-0005_S5_L001-001_round2.fastq.tar"
]
},
"TLE-L01-0003_10x Chromium 3' v3 sequencing": {
"metadata_submission": "NA",
"data_collection": "",
"sample_id": "TLE-L01-0003",
"organism": "Mouse",
"taxon_id": "NA",
"donor_id": "",
"genotype": "NA",
"modality": "Transcriptome",
"technique": "10x Chromium 3' v3 sequencing",
"anatomical_region": "NA",
"subspecimen_type": "nuclei",
"total_processed_subspecimens": 0,
"organization": "NA",
"investigator": "NA",
"grant_number": "NA",
"data_archive": "NeMO",
"r24_directory": "NA",
"project": "NA",
"files": [
"http://data.nemoarchive.org/biccn/grant/u19_huang/arlotta/transcriptome/sncell/10x_v3/mouse/raw/TLE-L01-0003_S3_L002-001_round2.fastq.tar"
]
}
}